PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT38497

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 321aa MW: 36670 Da PI: 9.6295

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT38497	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.5	8.7e-15	29	76	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+t Ed+ll +++k+ G g+W+ +++ g+ R++k+c++rw +yl OIT38497 29 KGPWSTKEDLLLSNYIKENGEGQWRNLPKKAGLLRCGKSCRLRWMNYL 76 79****************************99**********97 PP
2	Myb_DNA-binding	54.3	3.2e-17	82	127	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l OIT38497 82 RGNFSQDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 127 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MFKSSALAFV QLQREMGRAP CCAKEGLRKG PWSTKEDLLL SNYIKENGEG QWRNLPKKAG 60 LLRCGKSCRL RWMNYLRPGI KRGNFSQDEE DLIIRLHSLL GNRWSLIAGR LPGRTDNEIK 120 NYWNTHLIKK LKSAGIEPKV NKIFSKYYSK KEPKKQAKTE KPRKKQDKKL KTKKKKDQPL 180 VQNTSDSPQV VFVPKPIRIS SCRNHSVEDV ALLSTSSSNS SEEADKSADR CTKLQLFTGS 240 ADESNHIGSY IRSLTDEGKI AEVSFIPCAS NLFDEVPLDE NMVEKVYEEY LQLLSEKCYF 300 QDNQLDDDLL AGNVFDHSML M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	2e-65	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT38497