PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT38661

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 494aa MW: 54423.1 Da PI: 9.7208

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT38661	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	71	91	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H OIT38661 71 CEICNKGFQRDQNLQLHRRGH 91 *******************88 PP
2	zf-C2H2	14	0.00015	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ OIT38661 146 WKCEKCSKKYAVQSDWKAHTKTC 168 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MMSGDVFSIP SSVKGVALPH HPQDVLLEPN PNPKANSSSK KRRNLPGTPD PDAEVIALSP 60 KTLMATNRFL CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NKQEIVKKKV YICPEKSCVH 120 NDPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKKYAVQSD WKAHTKTCGT REYKCDCGTL 180 FSRKDSFITH RAFCDALAEE SARITSVGTN NLNFNQQPNL VGGISQIGTG FAQDFSGMTS 240 GSSLHHQQQK PRLSLWLNQV NNNSQLNNPL HMSTPSSNLF ASSSSTGIPD HMVQMQSPNN 300 VFGNQMQWAI DKNTVATTPA TSMSETLSSM YSDNQNQHPK SSTPMSATAL LQKAAQIGST 360 KSNPTFFTNT FGVMNSSSSS SNTQMFNTLS QNTSEMHQVF TKQSEDYNPT DNGLINGCPN 420 MSSSANTKAI NFNQALMQTG GMQTQAVSFN YDNSLTRDFL GMGNEGGRPF LPQELAKFAS 480 MTSAMGLSHY SSGH

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MMSGDVFSIP SSVKGVALPH HPQDVLLEPN PNPKANSSSK KRRNLPGTPD PDAEVIALSP  60
KTLMATNRFL CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NKQEIVKKKV YICPEKSCVH  120
NDPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKKYAVQSD WKAHTKTCGT REYKCDCGTL  180
FSRKDSFITH RAFCDALAEE SARITSVGTN NLNFNQQPNL VGGISQIGTG FAQDFSGMTS  240
GSSLHHQQQK PRLSLWLNQV NNNSQLNNPL HMSTPSSNLF ASSSSTGIPD HMVQMQSPNN  300
VFGNQMQWAI DKNTVATTPA TSMSETLSSM YSDNQNQHPK SSTPMSATAL LQKAAQIGST  360
KSNPTFFTNT FGVMNSSSSS SNTQMFNTLS QNTSEMHQVF TKQSEDYNPT DNGLINGCPN  420
MSSSANTKAI NFNQALMQTG GMQTQAVSFN YDNSLTRDFL GMGNEGGRPF LPQELAKFAS  480
MTSAMGLSHY SSGH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-101	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT38661