PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT38675

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 197aa MW: 23411.6 Da PI: 10.475

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT38675	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	45.7	8.4e-15	7	51	5	49
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 n+ +r+v + R + ++KKA ELS+LC++e+ +++fs++ k e+ OIT38675 7 NEGKRSVVLQERMEALFKKADELSILCGVEIGIVVFSPHKKNAEF 51 6779*********************************99887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence
MARKNINEGK RSVVLQERME ALFKKADELS ILCGVEIGIV VFSPHKKNAE FEWPSRDKFK 60 QLLMRFLDKP LVERLKKMTT HEQFLRNEIE KNVRKIDQEK TEEKEMEQLF KQLYLGEKTV 120 FELDKRQLIG VRNLAMKAKE KAVERRIRLQ LQDQRLRLPI DHIPFRVAPL NVPYVSLQLP 180 IDPIPLRVAP LNVQYQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.2	1e-15	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT38675