PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT38703
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 251aa    MW: 28471 Da    PI: 5.4792
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT38703genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.33e-21105155155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
               ++++GVr+++ +grW+AeIrdp+    r kr++lg+++t+eeAa  +++a+ kl+g
  OIT38703 105 KKFRGVRQRP-WGRWAAEIRDPT----RgKRVWLGTYDTPEEAATVYDEAAVKLKG 155
               59********.**********84....35************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MIRNPVISPM DVPKTVKFSQ HIVTKNKHVP EQNEKPNFHS KFSQRVVRII LTDADATDSS  60
DDEGQDTVRR VKRHVTEINL MPSPNLICGK KRRLVSPDTD VTRRKKFRGV RQRPWGRWAA  120
EIRDPTRGKR VWLGTYDTPE EAATVYDEAA VKLKGPDAVT NFPKVIMADT TETGSVTDGG  180
EKSENDIALS PTSVLRNGFF TPFDDLGFCE VDAFGFDVDS LFRLPEFGMS EKYYGEEFGE  240
FDFDDFALEA R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190106KKRRLVSPDTDVTRRKK
291107KKRRLVSPDTDVTRRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-32ERF family protein