PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT38753
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 185aa    MW: 20681.4 Da    PI: 6.0612
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT38753genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.72.7e-222673249
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              +i n    qvtfskRr+g++KKA+ELS LC+aevavi+ s+ gk+y +
  OIT38753 26 KIANRNSLQVTFSKRRAGVFKKASELSALCGAEVAVIVESPAGKVYSF 73
              68899999**************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MEKKNENENE EIKKKSKGRQ KIKIEKIANR NSLQVTFSKR RAGVFKKASE LSALCGAEVA  60
VIVESPAGKV YSFGNPCVDS VINRYETGGR DEDGFSAALR LQIEEESKKK YLEAMGILDK  120
EKAVSVGVSG TNNWWEDLSL DNLGLQELQE CMASMEVLNN NLLKRADDLA NSSHDVLYQF  180
GAMKW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-27M-type_MADS family protein