PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT38755
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 285aa    MW: 30615.9 Da    PI: 8.6512
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT38755genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.91.7e-111153444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     W+ e d+ + +a + ++ +   +W++Ia+ ++ g+tlk++k+++
         OIT38755 11 WSREQDKAFENALATYPEDspdRWEKIASDVP-GKTLKEVKHHY 53
                     ********************************.**********9 PP
2Myb_DNA-binding42.12e-13118162347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
         OIT38755 118 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 162
                      6*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MTIDESSSSI WSREQDKAFE NALATYPEDS PDRWEKIASD VPGKTLKEVK HHYDLLLDDV  60
SRIESGCVPL PCYNSSSDSS TSHGGDEGIG KKSGNSNGES NHGGKSMRAD QERRKGIAWT  120
EDEHRLFLLG LDKYGKGDWR SISRNFVVTR TPTQVASHAQ KYFIRLNSMN RDRRRSSIHD  180
ITSVNTGEVS VPQGPITGQS NGSAAGSSSK QSKQPTPASA APPGVGIYGA TSIGQPVGGP  240
FVSAVGTPVN LPPSTHMAYG VRPPHPGAVV PGAPLTYPMP HTMHR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-102MYB family protein