PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT38817
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 65aa    MW: 7843.86 Da    PI: 4.6997
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT38817genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-09341543
              SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS
  Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterq 43
              ++f++eq++ Le+ Fe ++++ +e++ +LA++lgL+  q
  OIT38817  3 RKFSEEQVNLLEQSFEDEHKLETERKDKLASELGLDPHQ 41
              69*********************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    
MKRKFSEEQV NLLEQSFEDE HKLETERKDK LASELGLDPH QQEYSKLKIE YDTAIVEKCR  60
LEYII
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.12e-22HD-ZIP family protein