PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT38827
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20197.3 Da    PI: 9.8495
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT38827genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.88.7e-111555141
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
              k+ ++k+  ++ +s+ +n + K A  LS+LC++++a+iifs
  OIT38827 15 KFLKDKRAEKIALSNKQNALSKRAMDLSTLCGIDIAIIIFS 55
              567899999*******************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MARMTSQMKS KSEKKFLKDK RAEKIALSNK QNALSKRAMD LSTLCGIDIA IIIFSIVDEP  60
FFFGNPNVKS VVERFSQAKQ PFYRMSSRKM THEQTGGGEE NDTMKKKKKK TINEEEKGES  120
TLEIFEPTNL VRLEKLKQDI DELEKDLAEK IDELQSEIGV KDPKFVLKMN SAKSSAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107137KKKKTINEEEKGESTLEIFEPTNLVRLEKLK