PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT38841
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 357aa    MW: 39657.7 Da    PI: 4.4809
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT38841genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.00053305345954
               HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                r R d+i++ ++ L+e++P      ++K s + +  +A++Y++sL
  OIT38841 305 KRLRKDKIRETISILQEIIPGG----KGKDS-MVVIDEAIRYLRSL 345
               68999***************97....68888.77779*****9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    
MEKDFGSLFH HQYSDLQLAH LNFSYPRFDI GQQNSFPIYM TPQSNEVPMN GNSPLFTFSG  60
LLQSKASQPT EPHNWLYCSP QFYQGFAPVS TALLEEKLAP QALENPNAGA SSAQKRFLVF  120
DQSGDQTTLI YSSANATPVQ CPASLNPTPP ALSNLVKEDP EIKKNEASPF GHFFGDEYYE  180
ESNRDDVESE MREDTEELDA LLYSDDDYYY SEDDEERSTG HSPSTMTTHD LPEWVDKRGE  240
ELASSAKPTK RHKLLDGSYD APSLRDTATS AKAYACSDLE DDAQSSCGNG FDQVSGAPCS  300
PSGRKRLRKD KIRETISILQ EIIPGGKGKD SMVVIDEAIR YLRSLKVKAK SLGLDSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.11e-07bHLH family protein