PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT38851

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 329aa MW: 36675.7 Da PI: 7.682

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT38851	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.4	8e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++ +k++G g+W++ ++ g++R++k+c++rw +yl OIT38851 14 KGPWTPEEDQKLINHIKKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	56.4	6.7e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l OIT38851 67 RGKFSQEEEQTILNLHAILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MGRSPCCDES GLKKGPWTPE EDQKLINHIK KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQEEEQTILN LHAILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG 120 YDPMTHRPRT DIFNSLPHLI ALANLKELLV EQHHSSFEGQ AMRLQSEMAT LQYLHYLLQP 180 PPTTPNMEAY NLLNSLKDGQ FIGTNHLENS LNNIPPLLPS SSLQAIQDSI PFSHLPELQA 240 AVPCSSFQLT SLNNKDNMVQ LSVLSQGDQN MTATSSPWPP ASLSPSPRPP AAAATNHINI 300 AGDSNCSTSL FGGAWPEILL EDSLFHDIP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	8e-99	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT38851