PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT39203
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 27385.4 Da    PI: 8.4678
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT39203genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.58.7e-293080151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              krien + rqvtfskRr g+lKKA+ELSvLCdaev++++fs++gklye+ss
  OIT39203 30 KRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVSLMVFSQKGKLYEFSS 80
              79***********************************************96 PP
2K-box71.13.4e-24104194999
     K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
               l e+++e+l++e+a + +++e L++++R++lGedL+s+s+ eL+++e+qLe+sl++iR++K++ll+eqi  l+  ek l een +Lrk++e
  OIT39203 104 LLEQTTEHLKEEAATMSRKLELLENSKRRILGEDLDSCSIDELEKVEEQLERSLRNIRARKSQLLREQIALLKDEEKVLMEENAELRKEYE 194
               77899**********************************************************************************9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MLLHFLCLTI KLYISNLDFS RMVRGKTQIK RIENATSRQV TFSKRRSGLL KKAFELSVLC  60
DAEVSLMVFS QKGKLYEFSS SSSTNKTIER YQKNDKNLRH DKILLEQTTE HLKEEAATMS  120
RKLELLENSK RRILGEDLDS CSIDELEKVE EQLERSLRNI RARKSQLLRE QIALLKDEEK  180
VLMEENAELR KEYEVRPLPL FIDRQEEEHL QRQTMDVETQ LFIGPPERRS SH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.19e-71MIKC_MADS family protein