PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT39221

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 203aa MW: 22866.3 Da PI: 5.9859

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT39221	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.4e-05	30	52	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H++ H OIT39221 30 YRCSFCKRGFSNAQALGGHMNIH 52 9********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence
MESDLNSSNF DKYQITWKSE DLGLSQAKFY RCSFCKRGFS NAQALGGHMN IHRKDRAKLG 60 ESPSESLDIK KSVSPSPDIV PPSNDKLLQQ EVSRDDTSSP SKRPYVTPEE EHGHHRRHQH 120 HISKTKDGNH DYPISKAQDI DNHELIIGGD LLQLPLFVDF PSKKEINCGE TQEGNKGMQL 180 SDDSELDLEL RLGPEPPESS MKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	3e-17	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT39221