PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT39304
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 203aa    MW: 22400.2 Da    PI: 4.5919
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT39304genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.35.2e-3881081100
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               +C aCk+lrr+C+++C++apyf+ eq +++fa+vhk+FGasnv+kll +lp++ r++a+ ++ yeA ar++dP+yG+vg+i++l+qq+++l +e++   ++
  OIT39304   8 SCGACKFLRRRCSNECIFAPYFCYEQaTNHFAAVHKVFGASNVSKLLLHLPQHCRSEAAVTMSYEALARMQDPIYGCVGHIFALEQQVASLVEEIEIFANQ 108
               6***********************9978****************************************************************999987765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MAGPAGSSCG ACKFLRRRCS NECIFAPYFC YEQATNHFAA VHKVFGASNV SKLLLHLPQH  60
CRSEAAVTMS YEALARMQDP IYGCVGHIFA LEQQVASLVE EIEIFANQMA FYAGEVPMEN  120
TIDTLRFSLE CNNMNVGNNH ANHSITSLAH VNDTSANEAF ITQMNAELPE INGFDNLFSS  180
TFFDFDISDR VIEGPDLICP SNP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.13e-56LBD family protein