PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT39336
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 189aa    MW: 20087.3 Da    PI: 4.6493
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT39336genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-181768155
       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
              + ykG+r++k++g+Wv+eIr+p     r   r++lg+f t+e+Aa a++ a+++l+g
  OIT39336 17 PVYKGIRRRKSSGKWVSEIREP-----RspNRIWLGTFPTPEMAAVAYDVAALALKG 68
              68*******************9.....4489***********************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MSSPGASSSG GSSGRHPVYK GIRRRKSSGK WVSEIREPRS PNRIWLGTFP TPEMAAVAYD  60
VAALALKGRD VELNFPNSAS SLPVPATNSP RDIQAAAACA AAALGAAGDA LGAHGGVDNN  120
NNRPVSREIE NSTSWNNNEF IDEDLIFDMP NVIMNMAEGM LLSPPRFNLP DDDTTAAGYT  180
ADQDLWNCP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.15e-45ERF family protein