PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT39365
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 75aa    MW: 8644.2 Da    PI: 11.6818
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT39365genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.22.2e-28959151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              kri +k  rqvtfskRr+g+lKKA+ELS+LCda+vav++fs++g+ly++ss
  OIT39365  9 KRIGDKNSRQVTFSKRRKGLLKKAKELSILCDADVAVVVFSNRGRLYDFSS 59
              799**********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    
MGRKKVEIKR IGDKNSRQVT FSKRRKGLLK KAKELSILCD ADVAVVVFSN RGRLYDFSST  60
NRFLIKSLHI VRSSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-27MIKC_MADS family protein