PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT39384
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 84aa    MW: 9562.85 Da    PI: 8.3242
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT39384genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260108.26.4e-341484171
    DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearard 71
              +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+k+l++l++++reda++sl+ye ++r+r+
  OIT39384 14 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKIFGASNVTKMLNELQPHQREDAVNSLAYEDDMRLRN 84
              7*******************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    
MASSSSYSLS SYSPCAACKF LRRKCQPECV FAPYFPPDQP QKFANVHKIF GASNVTKMLN  60
ELQPHQREDA VNSLAYEDDM RLRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.35e-46LBD family protein