PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT39401
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 254aa    MW: 28934.5 Da    PI: 9.9824
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT39401genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.91.8e-1519102186
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               +W++  + +Liea  ++  rl+rg+l++++W+ev++ +  r+ g+  +r+ +qCk++++ l+k+yk +k+ ++       s++p++++l+
  OIT39401  19 CWSEGATETLIEAWGDRYIRLNRGNLRQKDWKEVADTVnsRQNGVkpQRTDVQCKNRIDTLKKKYKLEKTKSSP------SKWPFYNRLD 102
               7*************************************88777776689******************9998886......58*****997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MECQTAAPTR PHAGGREDCW SEGATETLIE AWGDRYIRLN RGNLRQKDWK EVADTVNSRQ  60
NGVKPQRTDV QCKNRIDTLK KKYKLEKTKS SPSKWPFYNR LDYLIGTNNV STSPCNRILT  120
AAITLTVKSN SNPNPNFGAV NYSGSSSRIN SSGSNNSSHD DLPFGSGGRK NKMEYVGLAE  180
ETTAYKELAR AILRFGEIYE RIESTKQQQM VELEKQRMEF TKELEVQRMN MFMETQLQIE  240
RAKRPARHPT STGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.16e-63Trihelix family protein