PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT39451
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 25402.3 Da    PI: 10.045
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT39451genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF915.9e-291059251
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              rien + rqvtfskRrng+lKKA+ELSvLCdaev ++ifs++gklye++s
  OIT39451 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVGLVIFSPRGKLYEFAS 59
              8***********************************************86 PP
2K-box85.98.5e-29841721098
     K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 +++++l++e a L k+ie L++++R+llGe+L+s++l+eLqq+e+qLe+s++ iRs+K+++++eq+++l++kek+l  en +Lr+k+
  OIT39451  84 VGHNMQHLKHETASLMKKIELLETSKRKLLGEGLGSCTLEELQQIEKQLERSVSAIRSRKMQVFREQMQRLKEKEKALAVENAMLREKF 172
               55789*********************************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVGLVIFSP RGKLYEFASS  60
SMQEIIERYK RHSKDKVLPE NQAVGHNMQH LKHETASLMK KIELLETSKR KLLGEGLGSC  120
TLEELQQIEK QLERSVSAIR SRKMQVFREQ MQRLKEKEKA LAVENAMLRE KFGGHQQRQT  180
STGEKEGEVI CIEGSSDKSD VETELFIGPP DECRIRRPLQ N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-83MIKC_MADS family protein