PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT39483
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 194aa    MW: 22249.8 Da    PI: 5.216
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT39483genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.59.8e-151859243
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
              ++ nk+  +vt s+ ++g+ KKA+E+S+LC++e+a++ifs  
  OIT39483 18 FVRNKRAEEVTISNMQKGLCKKAKEISTLCGIEIAILIFSII 59
              6789***********************************965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
VIMERNSSQI RMNVEREFVR NKRAEEVTIS NMQKGLCKKA KEISTLCGIE IAILIFSIIG  60
QPFLFGSPNV ESVVRRFLKA KQPIVSPLSG YIPYERTSGR KRKDEMDKKK KKVEENKDKE  120
KALESIFTCC PLEDLDLTDL EMFEKLDQNI EKLSNYLIEE IAQLQFVIDA EDPNLALEMN  180
VTSSSTLPSN WLSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-15M-type_MADS family protein