PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT39535

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 183aa MW: 20944.4 Da PI: 7.4519

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT39535	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.3	8.1e-21	23	84	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t+eq+++L +lF++ r+ps++++++++++l +++ ++V++WFqN++a+e++ OIT39535 23 KCGRWNPTTEQVKVLTDLFRSgLRTPSTDQIQKISSQLsfygKIESKNVFYWFQNHKARERQ 84 568***************99************************************97 PP
2	Wus_type_Homeobox	114.5	5.2e-37	23	86	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++ RW+Pt+eQ+k+L++l++sGlrtP++++iq+i+++L+ yGkie+kNVfyWFQN+kaRerqk+ OIT39535 23 KCGRWNPTTEQVKVLTDLFRSGLRTPSTDQIQKISSQLSFYGKIESKNVFYWFQNHKARERQKR 86 678***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence
MEEGMSGFSV RARGGCGGGG GTKCGRWNPT TEQVKVLTDL FRSGLRTPST DQIQKISSQL 60 SFYGKIESKN VFYWFQNHKA RERQKRRRVL VDEPKDDGIH FPCQDNNITS TKHFSEIYNY 120 NQGSEQPERV KETLQLFPLN SLSESESEKL RFFAEECKEN AAFSYTIGAE MDHPTLDLRL 180 SFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	89	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11260.1	2e-50	WOX family protein

Link Out ? help Back to Top
Ensembl	OIT39535