PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT39661
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 251aa    MW: 28320.6 Da    PI: 4.6136
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT39661genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-135496754
              HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
       HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  OIT39661 54 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 96
              57*********************66......****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MENIGDEYKN YWETNMFLQN EELDSSYFDE AISAYYDSSS PDGAQSSLAS KNIVSERNRR  60
KKLNERLFAL RAVVPNISKM DKASIIKDAI DYIQELHEQE RRIQAEISEL ESGRSKKNTS  120
VEFDQDGSFD AKPKRSRTLE QQYGYDSSGS TTRSSPSSSP VEVLELRVSS MGEKTVVVSL  180
TCSKRTDTMV KVCEIFESLN IKIISANITA FSGRLLKTAF IEADEEEKEL LKMRIETAIA  240
TLNDPDSPMS T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-92bHLH family protein