PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT39748
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 251aa    MW: 28349.7 Da    PI: 5.6131
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT39748genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.66e-1572124155
               CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
               ++ +hn+ Er RR++iNs ++ Lr+llP  +   ++kKls  ++  ++ +YI +Lq
  OIT39748  72 KKLNHNASERDRRKKINSLYSSLRSLLPAsD---HAKKLSIPSTISRVLKYIPELQ 124
               6789*************************66...9999***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MLAISSSPMF SNNFGWLLED PISHELNMTS AETSSDSVVA LHSSSHTRLL EHSDSKKFDQ  60
INNDDQPDHM VKKLNHNASE RDRRKKINSL YSSLRSLLPA SDHAKKLSIP STISRVLKYI  120
PELQNEVERL IEKKEELTSR TISNKENSAD FNKQKRRGGK DSSSLVISAS EVGDKEVVIQ  180
ISALKINKGS LAEAVSDLED EGLSLLNSSC FETFEDRVFY TMHFQVHGTM VVELDTLRDK  240
LSSYFEKEDE L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.14e-48bHLH family protein