PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT39754

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 185aa MW: 20722.7 Da PI: 5.8101

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT39754	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.5	5.2e-39	12	108	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C+aCk+lrr+C++dC++ p+fp+++p+kf +vh++FGasn+ k+l+++p ++reda+ s+vyeA ar+rdPvyG+vg+i++lq+++ +l++el+++ OIT39754 12 PCSACKFLRRRCTQDCIFLPHFPSAEPQKFIAVHRIFGASNINKILQETPADNREDAVISMVYEATARLRDPVYGCVGIISALQKHVFHLQSELNEA 108 7********************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence
MSSTSKKNKH MPCSACKFLR RRCTQDCIFL PHFPSAEPQK FIAVHRIFGA SNINKILQET 60 PADNREDAVI SMVYEATARL RDPVYGCVGI ISALQKHVFH LQSELNEALA EVMSLQTQLS 120 DALSLPSLIE GSPITPENHE FLHFQKPSEQ NAYANASDAL LLLPEAADHY CLQETEVLQL 180 PYLDI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	3e-46	LBD family protein

Link Out ? help Back to Top
Ensembl	OIT39754