PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT39984

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 480aa MW: 52879.9 Da PI: 6.9927

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT39984	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.4	3.1e-09	302	349	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq OIT39984 302 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 349 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MEKDYFMNGG ITNPPLQFEP TMTMPFPSNW NSLHSGQSSD FFLNPNWDHD STHQFDSTLN 60 SIVSSSPAQL IGKLSTVCSS PQSPFNNNNT NTNNSCYTTP KLHMPSLGNS LPLNPPLPAV 120 SNDPGFAQRA AKFSCFGSRS FNGRTSPLGE LTHRSAQQLG NGKLPRVSSS PSLKQAGSPL 180 QIKNSGQTRM ELMSSNESVS EPSGETGPKT PTELNSTRKR KTASSEKTKE AAPANGNMDD 240 DNARTKRCKQ VVVEGNETEN GAVNMEESKG NNEGDETQNQ KPPEPPKDYI HVRARRGQAT 300 DSHSLAERVR REKISERMKL LQDLVPGCNK VTGKALMLDE IINYVQSLQR QVEFLSMKLA 360 SVNPSLDFPA ENLLPKDICQ PNGSLPQPVF PVDYQQPRQL PQHTANTLDN SLFRTLGMQL 420 PSLDGLGEYL NQFPTMCEDD LQSIVQMGFS QNPNKDLTLQ SQSFPGKKRE RASSNVSHEN

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MEKDYFMNGG ITNPPLQFEP TMTMPFPSNW NSLHSGQSSD FFLNPNWDHD STHQFDSTLN  60
SIVSSSPAQL IGKLSTVCSS PQSPFNNNNT NTNNSCYTTP KLHMPSLGNS LPLNPPLPAV  120
SNDPGFAQRA AKFSCFGSRS FNGRTSPLGE LTHRSAQQLG NGKLPRVSSS PSLKQAGSPL  180
QIKNSGQTRM ELMSSNESVS EPSGETGPKT PTELNSTRKR KTASSEKTKE AAPANGNMDD  240
DNARTKRCKQ VVVEGNETEN GAVNMEESKG NNEGDETQNQ KPPEPPKDYI HVRARRGQAT  300
DSHSLAERVR REKISERMKL LQDLVPGCNK VTGKALMLDE IINYVQSLQR QVEFLSMKLA  360
SVNPSLDFPA ENLLPKDICQ PNGSLPQPVF PVDYQQPRQL PQHTANTLDN SLFRTLGMQL  420
PSLDGLGEYL NQFPTMCEDD LQSIVQMGFS QNPNKDLTLQ SQSFPGKKRE RASSNVSHEN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	222	TRKRKT
2	466	472	GKKRERA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-89	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT39984