PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT40060

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 250aa MW: 28263.3 Da PI: 9.0071

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT40060	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.1	8.4e-32	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ OIT40060 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58 79**********************************************95 PP
2	K-box	103	4e-34	80	169	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 e++++s++qe++kLk++ e Lqr+qRhllGedL++LslkeLq+Le+qLe +l + R++K++++ eq+eel++ke++l + nk+L+ k+ OIT40060 80 CGERETQSWYQEVSKLKAKFEALQRTQRHLLGEDLGPLSLKELQNLEKQLEGALAQARQRKTQIMAEQMEELRRKERQLGDVNKQLKIKV 169 67899*********************************************************************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSS 60 GITKTLERYQ RCCLNPQDNC GERETQSWYQ EVSKLKAKFE ALQRTQRHLL GEDLGPLSLK 120 ELQNLEKQLE GALAQARQRK TQIMAEQMEE LRRKERQLGD VNKQLKIKVS LELSSLEAEG 180 QGLRALPFPW TCNASAGSSS FAVHPSQSNH MECEPDPVLQ IGYHHYMAAE GASGSRTMAV 240 ESNIIHGWGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	3e-96	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT40060