PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT40273
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 259aa    MW: 28985.6 Da    PI: 10.1555
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT40273genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-19125173355
       AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               y+GVr ++ +grW AeIrd       r r++lg+f+t+eeAa+a++aa++ l+g
  OIT40273 125 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTPEEAARAYDAAARWLRG 173
               9*******.**********32....25**********************97776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MYTHAQMLQK TDPFFLSKQQ SLYPNEPIDH LCIDSTKYLD PFHSFSEFPT PEHDQKSPVL  60
EGIAAVVGEH VLFGSCNNKN KRSVDQNSEN TTAVSILKRT CHAPDKYRGG AGKEEKRNVP  120
AERSYRGVRK RPWGRWSAEI RDRIGRCRHW LGTFDTPEEA ARAYDAAARW LRGSKARTNF  180
QIPPVVPLPL HSSPTSTSSS SNTSAEEKKN KKNIPCAKRN TPNNNRKCSV VTSAAHLFSS  240
SSTPTVELDL KLGFGKKSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.13e-30ERF family protein