PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT40351

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 695aa MW: 80293.2 Da PI: 7.8051

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT40351	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.7	3.4e-22	84	167	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+evGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ leHnH l OIT40351 84 NYYNCYAREVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMMRMRMVDSKRWRVLEVTLEHNHLL 167 69***************************************9988.....99*******************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence
MEEASLDSEV DLTGQGSGRS QEIESDGLDD QNSEQIESDE LFSQSGGQIE SDALDDQNGF 60 TDGQKQFVAP AVGMEFESYD DAYNYYNCYA REVGFRVRVK NSWFKRNSRE KYGAVLCCSS 120 QGFKRIKDVN RLRKETRTGC PAMMRMRMVD SKRWRVLEVT LEHNHLLGAK AYKSIKKTGA 180 GNKKKLDSNC DAEVRTIKLY RALVIDAGAN RNANFSVRRC KTTSDCHDKL NLRKGDTQAM 240 YNYFCRMQLT NPNFFYLMDL NDEGQLRNVF WVDARSRAGY AYFIDVIYFD NSYLCNKYEI 300 GLVAFVGTNH HGQSVLLGCG LLAGETKASY VWVFKAWLTC SLGRFPQTII TERCKILESA 360 ISEVFPRSSH CVALSHIMRK VPEKLGGLRN YDAIRKALIK TIYEALKPFD FEASWRFMIQ 420 RFGVGDHEWL LSLYDDRTKW APVYLKDTFF AGMATARSNE TLTAFFDKYL HKQTPLKEFL 480 DKYELALQKK YKEEAVADTE SRNSNPELKT RCSFELQLSK VYSREIFKRV QLEVEEMYSC 540 FSTTQLHVDG QMVIFLVKER VLGEGNRREI RDYEVLYNRA AAEVRCICSC FNFYGYLCRH 600 ALCVLNFNGV EEIPSKYILS RWKKDYKRLG ASDLESSSTE STEHVQWFSQ LYRSALQVVE 660 EGVISLDHYK VALNAFEESL TRVHHIEEKL NKYSL

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence

MEEASLDSEV DLTGQGSGRS QEIESDGLDD QNSEQIESDE LFSQSGGQIE SDALDDQNGF  60
TDGQKQFVAP AVGMEFESYD DAYNYYNCYA REVGFRVRVK NSWFKRNSRE KYGAVLCCSS  120
QGFKRIKDVN RLRKETRTGC PAMMRMRMVD SKRWRVLEVT LEHNHLLGAK AYKSIKKTGA  180
GNKKKLDSNC DAEVRTIKLY RALVIDAGAN RNANFSVRRC KTTSDCHDKL NLRKGDTQAM  240
YNYFCRMQLT NPNFFYLMDL NDEGQLRNVF WVDARSRAGY AYFIDVIYFD NSYLCNKYEI  300
GLVAFVGTNH HGQSVLLGCG LLAGETKASY VWVFKAWLTC SLGRFPQTII TERCKILESA  360
ISEVFPRSSH CVALSHIMRK VPEKLGGLRN YDAIRKALIK TIYEALKPFD FEASWRFMIQ  420
RFGVGDHEWL LSLYDDRTKW APVYLKDTFF AGMATARSNE TLTAFFDKYL HKQTPLKEFL  480
DKYELALQKK YKEEAVADTE SRNSNPELKT RCSFELQLSK VYSREIFKRV QLEVEEMYSC  540
FSTTQLHVDG QMVIFLVKER VLGEGNRREI RDYEVLYNRA AAEVRCICSC FNFYGYLCRH  600
ALCVLNFNGV EEIPSKYILS RWKKDYKRLG ASDLESSSTE STEHVQWFSQ LYRSALQVVE  660
EGVISLDHYK VALNAFEESL TRVHHIEEKL NKYSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OIT40351