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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIT40395 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 287aa MW: 31570.7 Da PI: 8.0887 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 13.3 | 0.00025 | 103 | 125 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C+ C++ Fs++ L H++ H
OIT40395 103 FSCSFCKREFSTSQALGGHQNAH 125
89******************988 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 287 aa Download sequence |
MDTFSMKKPC SSEASSISAA SEEIDTNTKK MKGKVMDLGS ELKPHELSSA GVLLDLKVHN 60 GASNLELNLF NSTSSMKNSA PASESSNEAT PNKQRRSSES RVFSCSFCKR EFSTSQALGG 120 HQNAHKQERA LAKRRNGLVD VVSPFGPPNY HPYYNPYSSY TTHLPFHGTF TSRSSLGVQG 180 DSSTIHKPSS YNSWSVFSGY NYRFNPEKWS SSGSSVFRTE NLGTGSAPLE NSLKYESKNS 240 AKGFSLRDSP VKMDNNRGGN NKRKVGFGEE DAEEDEEESE IDLNLKL |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT5G25160.1 | 2e-20 | C2H2 family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIT40395 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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