PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT40398

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 249aa MW: 27471.4 Da PI: 7.0482

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT40398	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00077	104	126	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k Fs+ L H++ H OIT40398 104 FSCSFCEKKFSTFQALGGHQNAH 126 89*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MDSFSMKKPC SSEASSISAT SEEIDTNTKK MKGKVMDLGS ELMPHELSSA SALLDLKVHN 60 GASNLELNLL NSTSSMKNSA PTGESSNEAM PNNKQMPSLE TRVFSCSFCE KKFSTFQALG 120 GHQNAHKQER DLAKRRRTRS SLSVQGDSSA IHKPSPYNPW SFFSGYNYRF NPEKWSSSSS 180 SLFRTENTLG IGGAFKFENK NSAKGFGVRD SPVKVDDNRG GNNKRKMGLG EEDAEENEEE 240 TEIDLDLKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	4e-15	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT40398