PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT40423
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 239aa    MW: 27176.1 Da    PI: 9.6302
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT40423genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.34.1e-181050242
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
              +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+
  OIT40423 10 FITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSP 50
              89**************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIIYSP YENQPEVWPN  60
TMGAQRVLAE FKRMPEMEQS KKMVNQESFM RQRIAKAGEQ LKKQSKENRE KEMTEVMYQC  120
LAGKGMQNLN LGDLNDLGWV VDQNLKEINK RIEAFKKGAS SSSSAAVVSQ AAAPPPVEQK  180
PVVELGLEGM QRTQTEWFND WMNNNTSEQQ IGFGHGDEMI MPNFNDNHNT SMWPNAFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAFITNDSARKATFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-59M-type_MADS family protein