PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT40425

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 712aa MW: 76254.3 Da PI: 6.3831

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT40425	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50	5.4e-16	440	486	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq OIT40425 440 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 486 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 712 aa Download sequence
MPLSEFLKMA RGKLESGQQK ISSTTHLSSF PENDLVELVW ENGQIMMQGQ SSSAKKSPMP 60 NKLPSNASKI GKFGVMDSML NDMPLSVPAD ELDLIQEDEG VPWLGYAADD SLQQDYCSQF 120 LPEISGVTAN EPSGQSEFGL INKRGSSDKM IRDSHSVPIH NAGNFELRKV SPSSKFSQLC 180 SLAPQKGHLE SGVSDVFSSK ISYTPVSVYG DSGQNQAAAG EVKSIKIQKQ RMPGSCSSLL 240 NFSHFSRPAT FVKATKLQNI TGGLVSDSST LEAKGSKEGE NVTNSHNHVN AAAVEDYLSS 300 KKENDLHYPT NVVPSQLESR ASGASFHDRS CRVEQSDNVF RDNSSNSDNT PGQFTGAKAK 360 PDTADGERNA EHGVVCSSVC SGSSAERGSS DQPHNLKRKS RDNEDSGCPS EDVEEESVDI 420 KKTCPTRGGT GSKRSRAAEV HNLSERRRRD RINEKMRALQ ELIPNCNKAD KASMLDEAIE 480 YLKTLQLQVQ IMSMGAGFCV PPMMFPAGVQ HMHAAQMPHF SPMGFGMGMG MGMGYGMGML 540 EMNGRSSGCP IFPIPSVQGS HFPSPPISAS AAYPGIAVSN RHAFAHPGQG LPMPIPRPSL 600 APLAGQASTG AAAPLNAARV GVSVDRPSVP PILDSKNPVH KNSQIVNNAE SSLPINQTCS 660 QVQATNEVLD KSALVQKNCQ LLDVTDSEAN NLTSQSDVPG SEAGEFVLEK TL

Sequence ? help Back to Top

Protein Sequence Length: 712 aa Download sequence

MPLSEFLKMA RGKLESGQQK ISSTTHLSSF PENDLVELVW ENGQIMMQGQ SSSAKKSPMP  60
NKLPSNASKI GKFGVMDSML NDMPLSVPAD ELDLIQEDEG VPWLGYAADD SLQQDYCSQF  120
LPEISGVTAN EPSGQSEFGL INKRGSSDKM IRDSHSVPIH NAGNFELRKV SPSSKFSQLC  180
SLAPQKGHLE SGVSDVFSSK ISYTPVSVYG DSGQNQAAAG EVKSIKIQKQ RMPGSCSSLL  240
NFSHFSRPAT FVKATKLQNI TGGLVSDSST LEAKGSKEGE NVTNSHNHVN AAAVEDYLSS  300
KKENDLHYPT NVVPSQLESR ASGASFHDRS CRVEQSDNVF RDNSSNSDNT PGQFTGAKAK  360
PDTADGERNA EHGVVCSSVC SGSSAERGSS DQPHNLKRKS RDNEDSGCPS EDVEEESVDI  420
KKTCPTRGGT GSKRSRAAEV HNLSERRRRD RINEKMRALQ ELIPNCNKAD KASMLDEAIE  480
YLKTLQLQVQ IMSMGAGFCV PPMMFPAGVQ HMHAAQMPHF SPMGFGMGMG MGMGYGMGML  540
EMNGRSSGCP IFPIPSVQGS HFPSPPISAS AAYPGIAVSN RHAFAHPGQG LPMPIPRPSL  600
APLAGQASTG AAAPLNAARV GVSVDRPSVP PILDSKNPVH KNSQIVNNAE SSLPINQTCS  660
QVQATNEVLD KSALVQKNCQ LLDVTDSEAN NLTSQSDVPG SEAGEFVLEK TL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	445	450	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-48	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT40425