PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT40427

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 256aa MW: 29097 Da PI: 9.438

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT40427	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	7e-13	67	118	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ +hn++Er RR++ Ns ++ Lr+llP + + kK+s +++ ++ +YI +L OIT40427 67 KKLNHNANERDRRKNTNSLYSSLRSLLPAtD---QTKKVSLPATVARVLKYIPEL 118 6789***********************66...8999************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MFAVSSPLFS NLGLSLADPT SQELNTIENP DSGTNIPRYH SSSRPSIVHS ESKNFNEFNN 60 GDYRIVKKLN HNANERDRRK NTNSLYSSLR SLLPATDQTK KVSLPATVAR VLKYIPELKK 120 EVERLTQKKE DLTLRSIPKK EYSADFNKQT IRGGIQNSLS VVSANKVGDR EIMIQISILK 180 TNKSSFAEAI SELEEEELLL LNASCFQTLQ DRVFYNLHFQ VQGTLPVNVQ ILRDKLLAYY 240 ETEDKFLLPW ISGSRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	6e-45	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT40427