PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT40429

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 534aa MW: 61385.6 Da PI: 5.736

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT40429	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.3	1.1e-19	427	500	1	71
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnk..rykkikegekkr 71 rW++ ev aLi++r+ +e+++++ + +k+ lWee+s+ m++ gf+rs+ +Ckekwen++k k++ke+ +++ OIT40429 427 RWPQAEVEALIQIRNCLESKFQEaAGSKGVLWEEISNSMASLGFQRSARRCKEKWENMHKcsTVKRTKEITREQ 500 8*******************845699****************************9833456666666655 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MQSDYEMAGI HHQRNRNQQP QVEQQQQQQH RFIMENASTS SPFFPINYNH HYPPQQPNPL 60 LQPFTQQFFQ YQHLHYRSIL EQQQHQDIRL ELNAEGENHQ VQGVSVPFFP LSFKEDSSSK 120 GEREEDALIR GSEGYSNEAR QTSLAVSHCW QNQEDSAIKQ PFWKPLCAEF SNGNNNNSNE 180 SEKNKHEEDQ EMYPEEIHQQ QIIKSLEENK CRVVFGELEA IYATNADNTN TTNIHRIASE 240 SVLTAEDLPI NNNNNVSFPV ATFNDSNQTS GPTAIATTTP GAIDIGSESA SVGEATREDE 300 VHNKRKRRRN AKEGTSITMA RFFESLVKKL VNHQEDLQKR FMETIERLDQ ERKEREETWR 360 EQELAKLQKE AAVRAQERTL ASNREAALVS YLEKLTGQKI NFQHGSELPI KNEDKSCSSL 420 AKLNNKRWPQ AEVEALIQIR NCLESKFQEA AGSKGVLWEE ISNSMASLGF QRSARRCKEK 480 WENMHKCSTV KRTKEITREQ LNDGNNSIDF VIQGNDTVDD HLGTVNLTEG NKRE

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MQSDYEMAGI HHQRNRNQQP QVEQQQQQQH RFIMENASTS SPFFPINYNH HYPPQQPNPL  60
LQPFTQQFFQ YQHLHYRSIL EQQQHQDIRL ELNAEGENHQ VQGVSVPFFP LSFKEDSSSK  120
GEREEDALIR GSEGYSNEAR QTSLAVSHCW QNQEDSAIKQ PFWKPLCAEF SNGNNNNSNE  180
SEKNKHEEDQ EMYPEEIHQQ QIIKSLEENK CRVVFGELEA IYATNADNTN TTNIHRIASE  240
SVLTAEDLPI NNNNNVSFPV ATFNDSNQTS GPTAIATTTP GAIDIGSESA SVGEATREDE  300
VHNKRKRRRN AKEGTSITMA RFFESLVKKL VNHQEDLQKR FMETIERLDQ ERKEREETWR  360
EQELAKLQKE AAVRAQERTL ASNREAALVS YLEKLTGQKI NFQHGSELPI KNEDKSCSSL  420
AKLNNKRWPQ AEVEALIQIR NCLESKFQEA AGSKGVLWEE ISNSMASLGF QRSARRCKEK  480
WENMHKCSTV KRTKEITREQ LNDGNNSIDF VIQGNDTVDD HLGTVNLTEG NKRE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	304	309	KRKRRR
2	305	309	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	3e-34	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OIT40429