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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIT40458 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 281aa MW: 31969.6 Da PI: 6.1049 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 55.2 | 1.2e-17 | 88 | 141 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe+ +++ e++ +LA+ lgL+ rq+ +WFqNrRa+ k
OIT40458 88 KKRRLNLEQVKALERSFEMGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCK 141
4557899*********************************************99 PP
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| 2 | HD-ZIP_I/II | 128.6 | 2.6e-41 | 87 | 178 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrl+ eqvk+LE+sFe+ +kLeperK++lar+Lgl+prq+a+WFqnrRAR ktkqlEkdye Lkr++d+lk++n++L++++++L++el+
OIT40458 87 EKKRRLNLEQVKALERSFEMGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCKTKQLEKDYEILKRQCDKLKADNDALKTQNKKLHSELQ 178
69***************************************************************************************997 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 281 aa Download sequence |
MLFSSTGTMA FAPETISVDF RNHEAANDDL PSSFPSHVFP SSCPPHQEFQ GISPLLMRRA 60 MSFDHNQESR VEDDMSDDDG SSHLLGEKKR RLNLEQVKAL ERSFEMGNKL EPERKMQLAR 120 ALGLKPRQIA IWFQNRRARC KTKQLEKDYE ILKRQCDKLK ADNDALKTQN KKLHSELQLL 180 SLGNRESAGG TAPILFNLNK ENEGCNWNNN GSGDENNSTI DVNLGTTTRT SSTNSPLNNH 240 DVFPTAYKVD QTVNEEGFCN MFTNVEDQTN FWPLPVQQHF Y |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 136 | 144 | RRARCKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G15150.1 | 8e-57 | HD-ZIP family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIT40458 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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