PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT40510

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 203aa MW: 22413.4 Da PI: 4.7731

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT40510	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.2e-05	33	55	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H OIT40510 33 YTCTFCRREFRSAQALGGHMNVH 55 9********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence
MWNPKDDDDS WEIRAFEEDT SNSMGATWPP RSYTCTFCRR EFRSAQALGG HMNVHRRDRA 60 KLNQTPLASN SSTTFPNANS TLLIQSQEFI TNGGLCLLYS LPNNPNTIFN PSTVKSSVDP 120 STLLTIPPSF MNNLMSSCTP PSLNFPINQP QNINSSSNTS ETSASNGTSN DNNHNDGSSK 180 RDSAIEDEID LELRLGWRSS SSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	3e-33	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT40510