PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT40597

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 518aa MW: 56766.4 Da PI: 9.2576

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT40597	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H OIT40597 57 FICEICNKGFQRDQNLQLHRRGH 79 89*******************88 PP
2	zf-C2H2	13	0.00031	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + OIT40597 134 WKCEKCSKKYAVQSDWKAHTKIC 156 58*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MMSDDGLSFI QDPNPSNNPN PNSNPSAKRK RNLPGKPDPD AEVIALSPKS LMATNRFICE 60 ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNK NEVIKKKVYI CPEKTCIHHD PSRALGDLTG 120 IKKHYSRKHG EKKWKCEKCS KKYAVQSDWK AHTKICGTRE YKCDCGTLFS RKDSFITHRA 180 FCDALAEESA RFTSVPSTTN LNFRNELLSG GMINGNPQFG NSLFRPEFMG LGLDPAINHQ 240 FNVDGQKPRM PLWLENNINP NSGNNPNDFL VASSSSTSNL PHQMVQMAPP HNNQQWFING 300 GGGGGDDCGF GSSSSLPSRV LREEEENKRN LSETISSMYY NSHQQETTTP PSHMSATALL 360 QKAAQMGSTR SNSALFGSGF GLMGSSFSKS NGQFAADQDL NGLMMNSPPS AVSTLTTTNN 420 NNSNNQAGNR LLLGGDLMNS SSLEGNSSAK NSDPFLMLNN KGKQVNLSGN EAIEGSLTRD 480 FLGVGGNENR PFLSKTELAK FGNTSSSAMG LSQYNGSH

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MMSDDGLSFI QDPNPSNNPN PNSNPSAKRK RNLPGKPDPD AEVIALSPKS LMATNRFICE  60
ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNK NEVIKKKVYI CPEKTCIHHD PSRALGDLTG  120
IKKHYSRKHG EKKWKCEKCS KKYAVQSDWK AHTKICGTRE YKCDCGTLFS RKDSFITHRA  180
FCDALAEESA RFTSVPSTTN LNFRNELLSG GMINGNPQFG NSLFRPEFMG LGLDPAINHQ  240
FNVDGQKPRM PLWLENNINP NSGNNPNDFL VASSSSTSNL PHQMVQMAPP HNNQQWFING  300
GGGGGDDCGF GSSSSLPSRV LREEEENKRN LSETISSMYY NSHQQETTTP PSHMSATALL  360
QKAAQMGSTR SNSALFGSGF GLMGSSFSKS NGQFAADQDL NGLMMNSPPS AVSTLTTTNN  420
NNSNNQAGNR LLLGGDLMNS SSLEGNSSAK NSDPFLMLNN KGKQVNLSGN EAIEGSLTRD  480
FLGVGGNENR PFLSKTELAK FGNTSSSAMG LSQYNGSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-104	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT40597