PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT40629

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 77aa MW: 8570.94 Da PI: 10.8419

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT40629	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.7	1.3e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqv fskRrng+lKKA+EL +LCd+ev v++fsstg+lyeyss OIT40629 10 RIDNSTSRQVAFSKRRNGLLKKAKELAILCDTEVGVMVFSSTGRLYEYSS 59 8***********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence
MGRGKIVIRR IDNSTSRQVA FSKRRNGLLK KAKELAILCD TEVGVMVFSS TGRLYEYSST 60 RIVQDISQPI KGGNIDP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14210.1	2e-32	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT40629