PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT40688

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 212aa MW: 24759.4 Da PI: 9.4949

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT40688	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	91.5	4.1e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skRrngi+KKA+E+ vLCda+v++iif+++gk++ey+s OIT40688 9 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCS 59 79***********************************************96 PP
2	K-box	80.3	4.5e-27	71	169	1	99
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 yqk+sg++l++ak+e+l++e++++kke++++q ++Rhl+Ged++sL++keL+ +e++L+++l++i +k++e+l++ ++ q e+e+++ + aL++k + OIT40688 71 YQKTSGRRLWDAKHENLSNEIDRIKKENDSMQVKLRHLKGEDINSLNHKELMVMEEALQNGLSSISAKQSEILRMVRKNDQILEEEHKQLQYALHQKEM 169 8999********************************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence
MGRGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEITVLCD AKVSLIIFGN SGKMHEYCSP 60 STTIADMLDG YQKTSGRRLW DAKHENLSNE IDRIKKENDS MQVKLRHLKG EDINSLNHKE 120 LMVMEEALQN GLSSISAKQS EILRMVRKND QILEEEHKQL QYALHQKEMA AMGGNMRVIQ 180 EEVYHQRDRD YEYQMPFALR VQPMQPNLHE RM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	3e-87	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT40688