PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIV89346

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C2H2

Protein Properties

Length: 486aa MW: 53976 Da PI: 9.381

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV89346	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00074	430	452	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C++ F++ L H r+H OIV89346 430 HECPICNRIFRSGQALGGHKRSH 452 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MDEKKFACKY CSKRFPCGKS LGGHIRTHMN EHSGQTKEEK SNAAMLKFDA MRKKRDSLGY 60 DDGSGSGSGA AGNPTYGLRE NPKKTMKFVH SNATNNVQQQ FDKFCKECGK GFSSLKALCG 120 HMACHSEKEK RKLVVDNQSD VETNSAARRS KRMRFNNISS SSSNNNNHLF SSLANGSSSV 180 SEVEQEQEEV AKCLIMLSQD STYNRSSRFA FFAEPSDNNS VVLEAKSPSL DTKFTAKNVQ 240 NSASNAYRFE EKKLQLHDKK FKSVEMGYQS HDSDSGYVRY GPKKPKKVDS ADSNDGFFRS 300 EVKSSKVGDM AAFDDYDVEF GKLASGDFQD GKEATRRFAS KRRLIYDSLG SKKVANGCNN 360 DETYKSKGWK YESLNTEKEN GYDDDSAYES DENSTDSDSY PAAKPNSSKV LNGKKSSKGK 420 KLKSKKNKEH ECPICNRIFR SGQALGGHKR SHFIVGSEKN TIMIRPASPP PAPCLIDLNL 480 PAPVDE

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MDEKKFACKY CSKRFPCGKS LGGHIRTHMN EHSGQTKEEK SNAAMLKFDA MRKKRDSLGY  60
DDGSGSGSGA AGNPTYGLRE NPKKTMKFVH SNATNNVQQQ FDKFCKECGK GFSSLKALCG  120
HMACHSEKEK RKLVVDNQSD VETNSAARRS KRMRFNNISS SSSNNNNHLF SSLANGSSSV  180
SEVEQEQEEV AKCLIMLSQD STYNRSSRFA FFAEPSDNNS VVLEAKSPSL DTKFTAKNVQ  240
NSASNAYRFE EKKLQLHDKK FKSVEMGYQS HDSDSGYVRY GPKKPKKVDS ADSNDGFFRS  300
EVKSSKVGDM AAFDDYDVEF GKLASGDFQD GKEATRRFAS KRRLIYDSLG SKKVANGCNN  360
DETYKSKGWK YESLNTEKEN GYDDDSAYES DENSTDSDSY PAAKPNSSKV LNGKKSSKGK  420
KLKSKKNKEH ECPICNRIFR SGQALGGHKR SHFIVGSEKN TIMIRPASPP PAPCLIDLNL  480
PAPVDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	87	RKKRDSLGYDDGSGSGSGAAGNPTYGLRENPKKTMK
2	282	288	PKKPKKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	9e-73	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIV89346