PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIV90570

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

RAV

Protein Properties

Length: 360aa MW: 39575.6 Da PI: 9.5499

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV90570	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	40.4	7.3e-13	65	113	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+ +++g OIV90570 65 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNGEDEAARAYDIAAVRFRG 113 89**9888.8*****3.....5******99*********9998 PP
2	B3	98.4	4.6e-31	195	297	1	94
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+ tpsdv+k++rlv+pk++ae+h + ++++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD v F+++ +++l OIV90570 195 FEKTVTPSDVGKLNRLVIPKQHAEKHfplsdgsspSTAAAKGMLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDAVQFYRSTGPDRKL 295 99**************************977764455699************************************************876677766 PP EE CS B3 93 vv 94 ++ OIV90570 296 YI 297 65 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MDGVSCTDET TTTSDSPSIS LPSKLSLPPL PNTLSRVGSG ASTVVDPDGV FCGGAEAESR 60 KLPSSKYKGV VPQPNGRWGA QIYEKHQRVW LGTFNGEDEA ARAYDIAAVR FRGKDAVTNR 120 KTFASDGSGD GEIEFLNSHS KSEIVDMLRK HTYHDELQQS KNNTCGKQRR HHESSAATPF 180 GNRGACDTKA REILFEKTVT PSDVGKLNRL VIPKQHAEKH FPLSDGSSPS TAAAKGMLLN 240 FEDVGGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLKAG DAVQFYRSTG PDRKLYIDSK 300 KRSDEVGPVV EPVHMVRLFG VNLLNLPGSD VVGGNCNGKR KEMELFALEC SKKQKIIGAL

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MDGVSCTDET TTTSDSPSIS LPSKLSLPPL PNTLSRVGSG ASTVVDPDGV FCGGAEAESR  60
KLPSSKYKGV VPQPNGRWGA QIYEKHQRVW LGTFNGEDEA ARAYDIAAVR FRGKDAVTNR  120
KTFASDGSGD GEIEFLNSHS KSEIVDMLRK HTYHDELQQS KNNTCGKQRR HHESSAATPF  180
GNRGACDTKA REILFEKTVT PSDVGKLNRL VIPKQHAEKH FPLSDGSSPS TAAAKGMLLN  240
FEDVGGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKNLKAG DAVQFYRSTG PDRKLYIDSK  300
KRSDEVGPVV EPVHMVRLFG VNLLNLPGSD VVGGNCNGKR KEMELFALEC SKKQKIIGAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-137	RAV family protein

Link Out ? help Back to Top
Ensembl	OIV90570