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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIV92718 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 213aa MW: 24746.9 Da PI: 7.1466 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 65.5 | 7.2e-21 | 55 | 109 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
k++++++eq++ Le+ F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+
OIV92718 55 KKRKLSDEQINMLEQSFGNEHKLESERKDKLAMELGLDPRQVAVWFQNRRARWKN 109
66799************************************************95 PP
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| 2 | HD-ZIP_I/II | 118.2 | 4.7e-38 | 54 | 146 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
+kkr+ls+eq+++LE+sF +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE+ y+ Lk+a++a + e++ Le+ev +L+e+l+e
OIV92718 54 NKKRKLSDEQINMLEQSFGNEHKLESERKDKLAMELGLDPRQVAVWFQNRRARWKNKKLEEGYSNLKKAHEATMLEKCLLETEVLKLKEQLSE 146
59****************************************************************************************986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 213 aa Download sequence |
MNHQNIEDQI MLMSQLYSSG PYTQIGAQQG ENKKPRRRRN KKCKGGENGG LESNKKRKLS 60 DEQINMLEQS FGNEHKLESE RKDKLAMELG LDPRQVAVWF QNRRARWKNK KLEEGYSNLK 120 KAHEATMLEK CLLETEVLKL KEQLSEAEKE IQVLKHTDRV SSNSPSSSQQ SQSMEVVVDP 180 PFLGEFHVDG YDDVFYVPET HYINGMEWVN LYI |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 36 | 58 | RRRRNKKCKGGENGGLESNKKRK |
| 2 | 37 | 59 | RRRRNKKCKGGENGGLESNKKRK |
| 3 | 55 | 84 | KKRKLSDEQINMLEQSFGNEHKLESERKDK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G36740.1 | 4e-59 | HD-ZIP family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIV92718 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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