PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIV93412

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

LSD

Protein Properties

Length: 136aa MW: 14047.6 Da PI: 7.5014

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV93412	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.4	1.1e-13	25	49	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V OIV93412 25 CSGCRNLLLYPVGATSVCCAVCNAV 49 ************************9 PP
2	zf-LSD1	46.9	4.4e-15	64	88	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC++lL+Y+rGA+sV+C++C+tV OIV93412 64 CGGCHILLMYTRGATSVKCSCCHTV 88 ************************9 PP
3	zf-LSD1	38.8	1.6e-12	102	126	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C lL+Y +GA+sV+Ca+C++V OIV93412 102 CGNCIMLLMYQYGATSVKCAVCNFV 126 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence
MPVPLAPYPT PPPSAANGAQ SQLVCSGCRN LLLYPVGATS VCCAVCNAVT AVPHPGTEMA 60 QLVCGGCHIL LMYTRGATSV KCSCCHTVNL ALEANQVAHV NCGNCIMLLM YQYGATSVKC 120 AVCNFVTSVG ILEALL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	2e-59	LSD family protein

Link Out ? help Back to Top
Ensembl	OIV93412