PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIV94664

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

LSD

Protein Properties

Length: 145aa MW: 15031.7 Da PI: 8.073

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV94664	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.6	4.9e-14	28	52	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L+YP+GA+sV+Ca+C +V OIV94664 28 CSGCRIVLMYPIGATSVCCAVCKAV 52 ***********************98 PP
2	zf-LSD1	46.8	4.8e-15	67	91	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV OIV94664 67 CGGCHTLLMYIRGATSVQCSCCHTV 91 ************************9 PP
3	zf-LSD1	37.6	3.7e-12	105	129	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lL+Y +GA+sV+Ca+C +V OIV94664 105 CGNCKMLLMYQYGARSVKCAVCSHV 129 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence
MPVPLAPYPT TPAPYSPTTN GGQSQLVCSG CRIVLMYPIG ATSVCCAVCK AVTAVPPPGT 60 EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEANQV AHVNCGNCKM LLMYQYGARS 120 VKCAVCSHVT SIGASASTIE QKLST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	1e-63	LSD family protein

Link Out ? help Back to Top
Ensembl	OIV94664