PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIV95406

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 349aa MW: 37625.4 Da PI: 8.7284

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV95406	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.1	3.2e-08	52	75	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG+C yG+ C+++H++ OIV95406 52 PNCVYYMRTGFCGYGGGCRYNHPR 75 78********************96 PP
2	zf-CCCH	40	6.4e-13	96	120	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG Ck+G++CkF+H++ OIV95406 96 EPPCQYYLKTGACKFGASCKFHHPK 120 79*********************96 PP
3	zf-CCCH	35.7	1.4e-11	141	166	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++++G+Ck+G +CkF+H++ OIV95406 141 GEKECSYYLKMGQCKFGITCKFHHPQ 166 7899********************97 PP
4	zf-CCCH	37.8	3.2e-12	297	323	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f+rtG Ck+G C+F+H++ OIV95406 297 PGEPECQYFLRTGDCKFGLACRFHHPR 323 5799*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MDSYGRNPIR NGSNPTNQTE WHSSGTNTGL EESMWQLTLS SSESYPERTG APNCVYYMRT 60 GFCGYGGGCR YNHPRDRAAV AAAVRATGEY PERVGEPPCQ YYLKTGACKF GASCKFHHPK 120 HGGGSLSQAP LNIYGYPLRP GEKECSYYLK MGQCKFGITC KFHHPQPAGT SLPASAPQFY 180 QQVQSPTVPL PDQYGGASTS LRVARPPILP GSYVQGAYGP LLLSPGVVPF PGWNPYSASV 240 SPALSPGAQP AVGATSLYGV TQLNSSTSAF ARPYTPLPSS SGPSGSNQKE QVFPERPGEP 300 ECQYFLRTGD CKFGLACRFH HPRDQVVAQP LLNPIGLPLR PVSMVTHLI

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MDSYGRNPIR NGSNPTNQTE WHSSGTNTGL EESMWQLTLS SSESYPERTG APNCVYYMRT  60
GFCGYGGGCR YNHPRDRAAV AAAVRATGEY PERVGEPPCQ YYLKTGACKF GASCKFHHPK  120
HGGGSLSQAP LNIYGYPLRP GEKECSYYLK MGQCKFGITC KFHHPQPAGT SLPASAPQFY  180
QQVQSPTVPL PDQYGGASTS LRVARPPILP GSYVQGAYGP LLLSPGVVPF PGWNPYSASV  240
SPALSPGAQP AVGATSLYGV TQLNSSTSAF ARPYTPLPSS SGPSGSNQKE QVFPERPGEP  300
ECQYFLRTGD CKFGLACRFH HPRDQVVAQP LLNPIGLPLR PVSMVTHLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-161	C3H family protein

Link Out ? help Back to Top
Ensembl	OIV95406