PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIV95786

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 189aa MW: 19823.7 Da PI: 6.9165

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV95786	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.6	3.3e-11	59	81	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C ++a+ G Ck+G+ CkF H+ OIV95786 59 PPCTHYAQRGVCKFGPACKFDHP 81 89********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence
MIIEEVKKTA ELIKLKLSLD SKLEKLGLSL NWILHIIICS TAFLIVKHLM FVFDIQGAPP 60 CTHYAQRGVC KFGPACKFDH PIASLSYSPS ASSLADMPVA LYPVASSIGT LALSSSSLEL 120 RPDLPPGSNN EADSVRVSSS ISTLTGSVGF TLSTGEPVSQ PNTQPSSQSS NPIAATTTTT 180 SGNVSPTSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	4e-10	C3H family protein

Link Out ? help Back to Top
Ensembl	OIV95786