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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIV96865 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 200aa MW: 23534.2 Da PI: 6.0613 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 52.3 | 9.5e-17 | 17 | 67 | 4 | 54 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54
+ +f++eq++ Le +Fe+++++ ++ + Ak lgL+ rqV +WFqNrRa+
OIV96865 17 KKRFSDEQIRSLECVFESESKLEPWKKLQVAKDLGLQHRQVAIWFQNRRAR 67
678***********************************************9 PP
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| 2 | HD-ZIP_I/II | 79 | 7.9e-26 | 16 | 81 | 2 | 67 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLk 67
+k+r+s+eq+++LE Fe+e+kLep +K ++a++Lglq rqva+WFqnrRAR+ + + Ek+ +L
OIV96865 16 NKKRFSDEQIRSLECVFESESKLEPWKKLQVAKDLGLQHRQVAIWFQNRRARFESLKNEKESLQLE 81
79***************************************************9999998876664 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 200 aa Download sequence |
MHQNPRKKKK NKIENNKKRF SDEQIRSLEC VFESESKLEP WKKLQVAKDL GLQHRQVAIW 60 FQNRRARFES LKNEKESLQL ELQKLSDLME TSHEVKVGKE NSTEDDGSGS GYNSWRVEVK 120 PSFSNEGLED REAMHCSNDQ NDKSKSEKSE ERGQLQHQVL RMDEYEEIPN LALLEKWYNV 180 DPSGILNQSC SSSQWLDFWT |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 5 | 12 | PRKKKKNK |
| 2 | 6 | 18 | RKKKKNKIENNKK |
| 3 | 6 | 19 | RKKKKNKIENNKKR |
| 4 | 7 | 19 | RKKKKNKIENNKK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G46680.2 | 4e-20 | HD-ZIP family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIV96865 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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