PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIV98929

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 431aa MW: 46884.8 Da PI: 7.207

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIV98929	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.7	4.8e-09	107	128	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+++ + G C++G+rCkF H+ OIV98929 107 KICNYWVQ-GNCSFGERCKFLHS 128 68****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MDVDGGNKRV FNRLGGTAGD PRNQKVCYHW LAGKCNRHPC QFLHSELPPH NSNGAFSNRP 60 YGSGENLSFN GPSRRTSNFN TWGRGGGGRG GGRGGGRSGE VVMKGDKICN YWVQGNCSFG 120 ERCKFLHSWS LGDGFSLLTQ LEGHEKVVSG IVFPSGSNQL YTGSTDETVR VWDCQSGQCA 180 AAINLGGEVG CMISEGPWVF VGIPNFVKAW NTQNLLELSL SGPVGQVYAL SVINDMLFAG 240 TQDGSILVWK FNLTANCFEP AASLKGHSRG VVSLVVGANR LYSGSMDNTI RVWNLETLQC 300 LQTLSEHTSV VMSVLCWDQF LLSCSLDKTV KVWFATESGN LEVTYTHHEE NGIVTLCGMH 360 DSQGKPILVC SCNDNTVRLY DLPSFAERGK IFTKQEVRAI QSGPGGIFFT GDGTGQVKVW 420 NWIPEPTTSI Q

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MDVDGGNKRV FNRLGGTAGD PRNQKVCYHW LAGKCNRHPC QFLHSELPPH NSNGAFSNRP  60
YGSGENLSFN GPSRRTSNFN TWGRGGGGRG GGRGGGRSGE VVMKGDKICN YWVQGNCSFG  120
ERCKFLHSWS LGDGFSLLTQ LEGHEKVVSG IVFPSGSNQL YTGSTDETVR VWDCQSGQCA  180
AAINLGGEVG CMISEGPWVF VGIPNFVKAW NTQNLLELSL SGPVGQVYAL SVINDMLFAG  240
TQDGSILVWK FNLTANCFEP AASLKGHSRG VVSLVVGANR LYSGSMDNTI RVWNLETLQC  300
LQTLSEHTSV VMSVLCWDQF LLSCSLDKTV KVWFATESGN LEVTYTHHEE NGIVTLCGMH  360
DSQGKPILVC SCNDNTVRLY DLPSFAERGK IFTKQEVRAI QSGPGGIFFT GDGTGQVKVW  420
NWIPEPTTSI Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	93	RGGGGRGGGR
2	84	94	RGGGGRGGGRG
3	89	98	RGGGGRGGGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25440.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OIV98929