PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW00033

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C3H

Protein Properties

Length: 745aa MW: 78996.6 Da PI: 8.6002

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW00033	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.2	4.1e-11	41	65	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +f+++G+C yG+rC+F+H+ OIW00033 41 DEADCIYFLKNGFCGYGSRCRFNHP 65 6799********************8 PP
2	zf-CCCH	36.5	8.4e-12	89	113	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ OIW00033 89 QPVCQYYMRTGSCKFGPSCKYHHPR 113 689********************96 PP
3	zf-CCCH	33.1	9.5e-11	135	159	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G +CkF+H++ OIW00033 135 EKECSYYVKTGQCKFGTTCKFHHPQ 159 689********************97 PP
4	zf-CCCH	34.2	4.1e-11	307	331	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +f+++G+C yG+rC+F+H+ OIW00033 307 DEADCIYFLKNGFCGYGSRCRFNHP 331 6799********************8 PP
5	zf-CCCH	36.5	8.4e-12	355	379	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ OIW00033 355 QPVCQYYMRTGSCKFGPSCKYHHPR 379 689********************96 PP
6	zf-CCCH	33.1	9.5e-11	401	425	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G +CkF+H++ OIW00033 401 EKECSYYVKTGQCKFGTTCKFHHPQ 425 689********************97 PP
7	zf-CCCH	37.7	3.4e-12	566	590	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++++tG+Ck+G++C+++H+ OIW00033 566 DQPECQYYMKTGECKFGPSCRYHHP 590 689*********************8 PP
8	zf-CCCH	28.2	3.2e-09	614	637	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C ++ + G Ck+G++CkF H++ OIW00033 614 SVCTHYTQRGVCKFGPTCKFDHPM 637 68********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence
MERYGRASEG SHSDPSPEWG YQELSWQGRN GGAESYPQRP DEADCIYFLK NGFCGYGSRC 60 RFNHPCHSAR IITGAARTGV GEYPERVGQP VCQYYMRTGS CKFGPSCKYH HPRQGAGIAA 120 HVSLNYYGYP LRTGEKECSY YVKTGQCKFG TTCKFHHPQP VGVQIPAPSP VPPVSPLAVP 180 VPSPLYQTVQ SPSGPSSQQY GVLVARPSLL PGSLVQGPYG PMVVSPTMVP FSGWGPYQGP 240 ATSPVHPSST ASNVGSTQLY GITQIPSPTT AYAGPYQPSG SLLGPSGSEL SWQGRNGGAE 300 SYPQRPDEAD CIYFLKNGFC GYGSRCRFNH PCHSARIITG AARTGVGEYP ERVGQPVCQY 360 YMRTGSCKFG PSCKYHHPRQ GAGIAAHVSL NYYGYPLRTG EKECSYYVKT GQCKFGTTCK 420 FHHPQPVGVQ IPAPSPVPPV SPLAVPVPSP LYQTVQSPSG PSSQQYGVLV ARPSLLPGSL 480 VQGPYGPMVV SPTMVPFSGW GPYQGPATSP VHPSSTASNV GSTQLYGITQ IPSPTTAYAG 540 PYQPSGSLLG PSGSGQKEHS LPERPDQPEC QYYMKTGECK FGPSCRYHHP ADMSASKTNV 600 IISPVGLPLR PGASVCTHYT QRGVCKFGPT CKFDHPMGSL SYSPSASSLT DMPVAPYYSV 660 GYSHGTLAPS SSSSELRHEP TSGSSKEPAS SRMSSSMSTP TGSVGLTLSS GGPVSQSGTQ 720 ASVQSSSCLA TTDATMSSTV SYTSI

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence

MERYGRASEG SHSDPSPEWG YQELSWQGRN GGAESYPQRP DEADCIYFLK NGFCGYGSRC  60
RFNHPCHSAR IITGAARTGV GEYPERVGQP VCQYYMRTGS CKFGPSCKYH HPRQGAGIAA  120
HVSLNYYGYP LRTGEKECSY YVKTGQCKFG TTCKFHHPQP VGVQIPAPSP VPPVSPLAVP  180
VPSPLYQTVQ SPSGPSSQQY GVLVARPSLL PGSLVQGPYG PMVVSPTMVP FSGWGPYQGP  240
ATSPVHPSST ASNVGSTQLY GITQIPSPTT AYAGPYQPSG SLLGPSGSEL SWQGRNGGAE  300
SYPQRPDEAD CIYFLKNGFC GYGSRCRFNH PCHSARIITG AARTGVGEYP ERVGQPVCQY  360
YMRTGSCKFG PSCKYHHPRQ GAGIAAHVSL NYYGYPLRTG EKECSYYVKT GQCKFGTTCK  420
FHHPQPVGVQ IPAPSPVPPV SPLAVPVPSP LYQTVQSPSG PSSQQYGVLV ARPSLLPGSL  480
VQGPYGPMVV SPTMVPFSGW GPYQGPATSP VHPSSTASNV GSTQLYGITQ IPSPTTAYAG  540
PYQPSGSLLG PSGSGQKEHS LPERPDQPEC QYYMKTGECK FGPSCRYHHP ADMSASKTNV  600
IISPVGLPLR PGASVCTHYT QRGVCKFGPT CKFDHPMGSL SYSPSASSLT DMPVAPYYSV  660
GYSHGTLAPS SSSSELRHEP TSGSSKEPAS SRMSSSMSTP TGSVGLTLSS GGPVSQSGTQ  720
ASVQSSSCLA TTDATMSSTV SYTSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-118	C3H family protein

Link Out ? help Back to Top
Ensembl	OIW00033