PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIW01724

Organism

Lupinus angustifolius

Taxonomic ID

3871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus

Family

C2H2

Protein Properties

Length: 355aa MW: 39216.1 Da PI: 8.0197

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIW01724	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00084	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H OIW01724 146 YECKTCNRTFPSFQALGGHRASH 168 99**********99999998887 PP
2	zf-C2H2	13	0.0003	223	245	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H OIW01724 223 HECSICGAEFTSGQALGGHMRRH 245 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MEAPEDVSLG GSKEQNNIVK GKRTKRVRPQ SPIPFSITAI SSTAEKEDCY NVDNNNNNNK 60 DFNNNNNNST HATSSAGLQD STDEEEDMAN CLILLAQGQP RESPKHAAAC GGEDLTRGMN 120 YSKYSSRKFL EAAGIGGSAR AGYYVYECKT CNRTFPSFQA LGGHRASHKK PKAIASAAIA 180 IGTQEKKQEE EFQFKTNNNA SFSLQLNGRG NLYSNENIKS KVHECSICGA EFTSGQALGG 240 HMRRHRAPVG TNTTLSLTPS ALEPEEGHPP RKRRNVLSLD LDLNLPAPEP EHDPREPNFA 300 LASKQQQRQT PPQQQQRQTP PPQQQQQQQQ QQQQQQQQQQ SSIVFSTPAL VDCHY

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MEAPEDVSLG GSKEQNNIVK GKRTKRVRPQ SPIPFSITAI SSTAEKEDCY NVDNNNNNNK  60
DFNNNNNNST HATSSAGLQD STDEEEDMAN CLILLAQGQP RESPKHAAAC GGEDLTRGMN  120
YSKYSSRKFL EAAGIGGSAR AGYYVYECKT CNRTFPSFQA LGGHRASHKK PKAIASAAIA  180
IGTQEKKQEE EFQFKTNNNA SFSLQLNGRG NLYSNENIKS KVHECSICGA EFTSGQALGG  240
HMRRHRAPVG TNTTLSLTPS ALEPEEGHPP RKRRNVLSLD LDLNLPAPEP EHDPREPNFA  300
LASKQQQRQT PPQQQQRQTP PPQQQQQQQQ QQQQQQQQQQ SSIVFSTPAL VDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	8e-61	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIW01724