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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIW01780 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 184aa MW: 20962 Da PI: 6.2361 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 12.3 | 0.00053 | 34 | 56 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y C+ C + F++ L H++ H
OIW01780 34 YDCTFCRRGFTNAQALGGHMNIH 56
88*******************99 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 184 aa Download sequence |
MKSVIGGSSS ETSSEETDHQ KEDQYDSTSS KRSYDCTFCR RGFTNAQALG GHMNIHRKDK 60 AKAKQGTPNN LFTKEEYIMV PSFIPQTSTF CSMFESQRNY DIHFQPSSTP NYSRNPPAYA 120 FQYEFLNPTR YESLSTNYQE LLGPNLTLQI GPSHVSTDEV RKGIQNDGEV VDLELRLSHY 180 PYSN |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G53820.1 | 2e-15 | C2H2 family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIW01780 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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